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Molecular Systematics & Evolution of Microorganisms

Phylogenetic analysis using parsimony

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Table of Contents
  1. Phylogenetic analysis using parsimony
  2. Homoplastic changes can still be useful in supporting groups in parsimony analysis
  3. Finding most parsimonious trees - exact solutions
  4. Finding most parsimonious trees - exhaustive search
  5. Finding most parsimonious trees - exact solutions
  6. Finding most parsimonious trees - branch and bound
  7. Finding most parsimonious trees - heuristics 
  8. Finding most parsimonious trees - heuristics
  9. Finding most parsimonious trees - heuristics
  10. Finding most parsimonious trees - heuristics 1
  11. Finding most parsimonious trees - heuristics 2
  12. Finding most parsimonious trees - heuristics 3
  13. Finding most parsimonious trees - heuristics - summary
  14. Tree space may be populated by local minima and islands of most parsimonious trees
  15. Searching with topological constraints
  16. Topological constraints - 1
  17. Topological Constraints - 2
  18. Searching with topological constraints backbone constraints
  19. Character optimization
  20. Missing data
  21. Multiple most parsimonious trees
  22. Consensus methods - 1
  23. Strict consensus methods - 1
  24. Strict consensus methods - 2
  25. Majority-rule consensus methods 
  26. Majority rule consensus
  27. Reduced consensus methods - 1
  28. Reduced consensus methods - 2
  29. Consensus methods - 2
  30. Consensus methods - 3
  31. Successive approximations character weighting (SACW)
  32. Parsimony - advantages
  33. Parsimony - disadvantages
  34. Parsimony can be inconsistent
Author: Mark Wilkinson

Email: marw@nhm.ac.uk

Home Page: http://www.nhm.ac.uk/zoology/home/wilkinson.htm