Incompatibility see incongruence.

Incongruence also known as incompatibility.  This refers to different characters or trees suggesting different groups of relationships.  Incongruence is due to the presence of homoplasy.
 

Indel Insertion/deletion event.  Some sequences (DNA or Amino Acid) do not just evolve by point mutation process, but also by expansion and/or contraction of the length of the sequence.  Indels are the reason why multiple alignment is a difficult process.
 
 

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Any Questions? email: James Mcinerney